Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs28684994 chr9:98516874 T/C 8.38E-7 117 46.6 41.7 33.78 KM Plot
THYM rs28702011 chr9:97135769 G/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs28712208 chr4:1316695 A/T 3.82E-10 119 41.77 45.87 12.63 KM Plot
THYM rs28715696 chr9:97241324 C/T 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs28734804 chr21:44083075 G/A 9.54E-5 118 41.22 49.4 28.43 KM Plot
THYM rs28791555 chr2:30829300 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs28795113 chr4:98951331 A/G 0.000195 119 39.75 35.13 56.17 KM Plot
THYM rs28802403 chr9:97187513 G/C 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs28821019 chr7:29708312 C/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs28861843 chr4:143399130 A/G 0.00025 116 38.33 46.27 18.42 KM Plot
THYM rs28872608 chr4:9600754 G/T 7.93E-9 118 41.22 42.9 12.63 KM Plot
THYM rs2889639 chr2:106727030 G/A 0.000207 118 27.68 35.77 42.82 KM Plot
THYM rs2895064 chr10:5172344 G/A 0.000109 118 41.77 48.75 28.43 KM Plot
THYM rs2915641 chr12:121620766 A/G 3.55E-5 116 44.67 46.27 23.9 KM Plot
THYM rs2916678 chr8:6229038 G/C 1.24E-6 116 44.38 35.42 12.78 KM Plot